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Software

Helix v1.5

Helix simulates the alpha-helix/random-coli transition in the secondary structures of peptides and proteins using a two-state matrix algorithm based upon the Lifson-Roig model. For a complete description of Helix, see Andersen and Tong, Protein Science, 6, 1997, p. 9870.

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CSDb

The CSDb attempts to simplify the calculation and comparison of chemical shift deviations (CSDs). The database accepts referenced chemical shift values for the alpha and/or amide protons of a peptide or protein sequence and, using sample and experiment-temperature information, calculates CSDs. Once entered, CSD data for different sequences, samples, and temperatures may be rapidly compared in graphical form.

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